Problem
Cellular blood flow models often struggle to combine physical fidelity with large-domain performance. The goal of HemoCell is to simulate blood on a cell-resolved level without sacrificing scalability needed for practical biomedical studies.
Approach
- Build on a high-performance lattice Boltzmann framework for fluid-cell coupling.
- Implement robust high-shear stability and efficient communication strategies.
- Use dynamic load balancing and optimized data structures for large core counts.
- Provide advanced boundary conditions for realistic physiological setups.
Key finding
HemoCell demonstrates strong scalability (including very large core counts) while preserving detailed blood-cell dynamics. This makes it viable for both fundamental studies and translational simulation tasks.
Why it matters
A performant cellular blood digital twin expands what can be studied in silico, from platelet mechanics to patient-relevant microscale transport phenomena.
Outputs
References
2020
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The influence of red blood cell deformability on hematocrit profiles and platelet margination
Benjamin Czaja, Mario Gutierrez, Gábor Závodszky, and 3 more authors
PLoS Computational Biology, 2020
2019
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Red blood cell and platelet diffusivity and margination in the presence of cross-stream gradients in blood flows
Gábor Závodszky, Britt Rooij, Ben Czaja, and 3 more authors
Physics of Fluids, 2019
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Optimizing parallel performance of the cell based blood flow simulation software HemoCell
Victor Azizi Tarksalooyeh, Gábor Závodszky, and Alfons G Hoekstra
In Computational Science–ICCS 2019: 19th International Conference, Faro, Portugal, June 12–14, 2019, Proceedings, Part III 19, 2019
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Identifying the start of a platelet aggregate by the shear rate and the cell-depleted layer
BJM Van Rooij, G Závodszky, VW Azizi Tarksalooyeh, and 1 more author
Journal of the Royal Society Interface, 2019
2018
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Inflow and outflow boundary conditions for 2D suspension simulations with the immersed boundary lattice Boltzmann method
Victor W Azizi Tarksalooyeh, Gábor Závodszky, Britt JM Rooij, and 1 more author
Computers & fluids, 2018
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Numerical investigation of the effects of red blood cell cytoplasmic viscosity contrasts on single cell and bulk transport behaviour
Mike De Haan, Gabor Zavodszky, Victor Azizi, and 1 more author
Applied Sciences, 2018
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Cell-resolved blood flow simulations of saccular aneurysms: effects of pulsatility and aspect ratio
B Czaja, G Závodszky, V Azizi Tarksalooyeh, and 1 more author
Journal of The Royal Society Interface, 2018
2017
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Hemocell: a high-performance microscopic cellular library
Gábor Zavodszky, Britt Rooij, Victor Azizi, and 2 more authors
Procedia Computer Science, 2017
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Cellular level in-silico modeling of blood rheology with an improved material model for red blood cells
Gábor Závodszky, Britt Van Rooij, Victor Azizi, and 1 more author
Frontiers in physiology, 2017
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