Digital Twin of cellular blood

High-performance microscale simulations with HemoCell

Problem

Cellular blood flow models often struggle to combine physical fidelity with large-domain performance. The goal of HemoCell is to simulate blood on a cell-resolved level without sacrificing scalability needed for practical biomedical studies.

Approach

  • Build on a high-performance lattice Boltzmann framework for fluid-cell coupling.
  • Implement robust high-shear stability and efficient communication strategies.
  • Use dynamic load balancing and optimized data structures for large core counts.
  • Provide advanced boundary conditions for realistic physiological setups.

Key finding

HemoCell demonstrates strong scalability (including very large core counts) while preserving detailed blood-cell dynamics. This makes it viable for both fundamental studies and translational simulation tasks.

Why it matters

A performant cellular blood digital twin expands what can be studied in silico, from platelet mechanics to patient-relevant microscale transport phenomena.

Outputs

References

2020

  1. The influence of red blood cell deformability on hematocrit profiles and platelet margination
    Benjamin Czaja, Mario Gutierrez, Gábor Závodszky, and 3 more authors
    PLoS Computational Biology, 2020

2019

  1. Red blood cell and platelet diffusivity and margination in the presence of cross-stream gradients in blood flows
    Gábor Závodszky, Britt Rooij, Ben Czaja, and 3 more authors
    Physics of Fluids, 2019
  2. Optimizing parallel performance of the cell based blood flow simulation software HemoCell
    Victor Azizi Tarksalooyeh, Gábor Závodszky, and Alfons G Hoekstra
    In Computational Science–ICCS 2019: 19th International Conference, Faro, Portugal, June 12–14, 2019, Proceedings, Part III 19, 2019
  3. Identifying the start of a platelet aggregate by the shear rate and the cell-depleted layer
    BJM Van Rooij, G Závodszky, VW Azizi Tarksalooyeh, and 1 more author
    Journal of the Royal Society Interface, 2019

2018

  1. Inflow and outflow boundary conditions for 2D suspension simulations with the immersed boundary lattice Boltzmann method
    Victor W Azizi Tarksalooyeh, Gábor Závodszky, Britt JM Rooij, and 1 more author
    Computers & fluids, 2018
  2. Numerical investigation of the effects of red blood cell cytoplasmic viscosity contrasts on single cell and bulk transport behaviour
    Mike De Haan, Gabor Zavodszky, Victor Azizi, and 1 more author
    Applied Sciences, 2018
  3. Cell-resolved blood flow simulations of saccular aneurysms: effects of pulsatility and aspect ratio
    B Czaja, G Závodszky, V Azizi Tarksalooyeh, and 1 more author
    Journal of The Royal Society Interface, 2018

2017

  1. Hemocell: a high-performance microscopic cellular library
    Gábor Zavodszky, Britt Rooij, Victor Azizi, and 2 more authors
    Procedia Computer Science, 2017
  2. Cellular level in-silico modeling of blood rheology with an improved material model for red blood cells
    Gábor Závodszky, Britt Van Rooij, Victor Azizi, and 1 more author
    Frontiers in physiology, 2017